[INFO] fetching crate gecco 0.5.3...
[INFO] fixing gecco-0.5.3 against try#622891a4e29178280638a6b63a8908bde2c0c854+cargoflags=-Zfix-edition=end=2015,2024 for pr-157817-2
[INFO] extracting crate gecco 0.5.3 into /workspace/builds/worker-4-tc2/source
[INFO] started tweaking crates.io crate gecco 0.5.3
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate gecco 0.5.3
[INFO] tweaked toml for crates.io crate gecco 0.5.3 written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate gecco 0.5.3 on toolchain 622891a4e29178280638a6b63a8908bde2c0c854
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate gecco 0.5.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352
[INFO] running `Command { std: "docker" "start" "dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=" "-e" "RUSTDOCFLAGS=" "-w" "/opt/rustwide/workdir" "--user" "0:0" "dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fix" "--allow-no-vcs" "--allow-dirty" "--frozen" "--all" "--all-targets" "--message-format=json" "-Zfix-edition=end=2015,2024", kill_on_drop: false }`
[INFO] [stderr] crater-edition-check: migrating to next edition
[INFO] [stderr]    Migrating Cargo.toml from 2021 edition to 2024
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling libc v0.2.184
[INFO] [stderr]    Compiling typenum v1.19.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling cc v1.2.59
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling rustls v0.23.37
[INFO] [stderr]    Compiling zeroize v1.8.2
[INFO] [stderr]     Checking zlib-rs v0.6.3
[INFO] [stderr]    Compiling untrusted v0.9.0
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]    Compiling bytes v1.11.1
[INFO] [stderr]    Compiling rustls-pki-types v1.14.0
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling httparse v1.10.1
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling subtle v2.6.1
[INFO] [stderr]    Compiling base64 v0.22.1
[INFO] [stderr]     Checking indexmap v2.13.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling http v1.4.0
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling webpki-roots v1.0.6
[INFO] [stderr]    Compiling utf8-zero v0.8.1
[INFO] [stderr]    Compiling liblbfgs-compliant-rs v0.1.4
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking sacabase v2.0.0
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking bumpalo v3.20.2
[INFO] [stderr]    Compiling zip v2.4.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking console v0.16.3
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking zopfli v0.8.3
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling ureq-proto v0.6.0
[INFO] [stderr]     Checking noodles-bgzf v0.46.0
[INFO] [stderr]     Checking noodles-core v0.19.0
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling crypto-common v0.1.7
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking divsufsort v2.0.0
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking ordered-float v5.3.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking nom v8.0.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking circular v0.3.0
[INFO] [stderr]     Checking env_filter v1.0.1
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking indicatif v0.18.4
[INFO] [stderr]     Checking env_logger v0.11.10
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking noodles-fasta v0.60.0
[INFO] [stderr]     Checking quick-xml v0.39.2
[INFO] [stderr]     Checking md5 v0.8.0
[INFO] [stderr]     Checking regex-lite v0.1.9
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap_derive v4.6.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling rustls-webpki v0.103.10
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking gb-io v0.9.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking clap v4.6.0
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking sprs v0.11.4
[INFO] [stderr]     Checking hmmer-pure-rs v0.7.0
[INFO] [stderr]     Checking crfsuite-compliant-rs v0.4.0
[INFO] [stderr]     Checking prodigal-rs v0.3.4
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking ureq v3.3.0
[INFO] [stderr]    Compiling gecco v0.5.3 (/opt/rustwide/workdir)
[INFO] [stderr]    Migrating build.rs from 2021 edition to 2024
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking statrs v0.17.1
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]    Migrating src/lib.rs from 2021 edition to 2024
[INFO] [stderr]        Fixed src/types/mod.rs (1 fix)
[INFO] [stderr]    Migrating src/main.rs from 2021 edition to 2024
[INFO] [stderr]    Migrating tests/integration.rs from 2021 edition to 2024
[INFO] [stderr]    Migrating tests/conformance_full_pipeline.rs from 2021 edition to 2024
[INFO] [stderr]    Migrating tests/smoke.rs from 2021 edition to 2024
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 55.55s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr] crater-edition-check: gecco v0.5.3 (/opt/rustwide/workdir) updating edition from 2021 to 2024
[INFO] [stderr]    Compiling gecco v0.5.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 59.49s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr] crater-edition-check all packages now at latest edition
[INFO] [stderr] crater-edition-check: all finished
[INFO] running `Command { std: "docker" "inspect" "dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352", kill_on_drop: false }`
[INFO] [stdout] dedb4387686187b77d5202ff84d9f5860738a7f7307ae515cfea05a86e400352
